Info • Hypoxylon sp. NC1633 v2.0

Status

[November 2019] The Hypoxylon sp. 619 NC1633 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon sp. NC1633 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.12
Sequencing read coverage depth 521.35x
# of contigs 139
# of scaffolds 139
# of scaffolds >= 2Kbp 139
Scaffold N50 18
Scaffold L50 (Mbp) 0.66
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.10, 1.65, 1.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52250 50922 97.5%
Ests est.fasta 160837453 158447259 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2028 1811
transcript 1852 1637
exon 618 388
intron 90 66
description:
protein length (aa) 485 405
exons per gene 3.00 3
# of gene models 11290


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.