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Info • Hyalopycnis blepharistoma ATCC 48560 v1.0

Status

[April 2015] The Hyalopycnis blepharistoma ATCC 48560 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hyalopycnis blepharistoma ATCC 48560 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.93
Sequencing read coverage depth 102.2x
# of contigs 448
# of scaffolds 210
# of scaffolds >= 2Kbp 168
Scaffold N50 11
Scaffold L50 (Mbp) 0.53
# of gaps 238
% of scaffold length in gaps 1.8%
Three largest Scaffolds (Mbp) 1.83, 1.13, 1.03


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 28030 27522 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1669 1421
transcript 1437 1210
exon 245 152
intron 50 45
description:
protein length (aa) 426 347
exons per gene 5.85 5
# of gene models 7872


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

David Culley, Pacific Northwest National Laboratory, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.