Info • Hyaloraphidium curvatum SAG235-1 v1.0

Status

[April 2018] The Hyaloraphidium curvatum SAG235-1 genome was sequenced with Sequel, assembled with Falcon version 1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hyaloraphidium curvatum SAG235-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.93
Sequencing read coverage depth 312.53x
# of contigs 55
# of scaffolds 55
# of scaffolds >= 2Kbp 55
Scaffold N50 18
Scaffold L50 (Mbp) 0.72
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.61, 1.32, 1.15


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56642 53370 94.2%
Ests est.fasta 139387004 138403444 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1644 1423
transcript 1469 1284
exon 418 254
intron 71 59
description:
protein length (aa) 425 356
exons per gene 3.52 3
# of gene models 15197


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.