Info • Hydnopolyporus fimbriatus CBS384.51 v1.0


(May 2016) The Hydnopolyporus fimbriatus CBS384.51 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.


Summary statistics for the Hydnopolyporus fimbriatus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.57
Sequencing read coverage depth 92.2x
# of contigs 894
# of scaffolds 256
# of scaffolds >= 2Kbp 188
Scaffold N50 13
Scaffold L50 (Mbp) 0.86
# of gaps 638
% of scaffold length in gaps 2.7%
Three largest Scaffolds (Mbp) 3.08, 1.59, 1.51

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 77211 74105 96.0%
Ests est.fasta 168394027 165204037 98.1%

Gene Models FilteredModels1
length (bp) of: average median
gene 1834 1585
transcript 1484 1264
exon 239 146
intron 69 59
protein length (aa) 435 354
exons per gene 6.22 5
# of gene models 12424


Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.