Status
This draft release was produced using Illumina data and the AllPathsLG assembler. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.
Summary statistics for the Hydnomerulius pinastri v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 38.23 |
| Sequencing read coverage depth | 41.3 |
| # of contigs | 3067 |
| # of scaffolds | 605 |
| # of scaffolds >= 2Kbp | 428 |
| Scaffold N50 | 16 |
| Scaffold L50 (Mbp) | 0.69 |
| # of gaps | 1231 |
| % of scaffold length in gaps | 7.7% |
| Three largest Scaffolds (Mbp) | 2.44, 2.06, 1.77 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | EstClusters | 56307 | 48088 | 85.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1723 | 1416 |
| transcript | 1374 | 1136 |
| exon | 240 | 150 |
| intron | 76 | 57 |
| description: | ||
| protein length (aa) | 391 | 311 |
| exons per gene | 5.72 | 4 |
| # of gene models | 14065 |
Collaborators
David Hibbett, Clark University
Igor Grigoriev, DOE Joint Genome Institute
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
