Info • Hydnomerulius pinastri v1.0
Please note that this organism is for archival use only. Please see the current Hydnomerulius pinastri v2.0 site for the latest data and information.


This draft release was produced using Illumina data and the AllPathsLG assembler. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Hydnomerulius pinastri v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 38.23
Sequencing read coverage depth 41.3
# of contigs 3067
# of scaffolds 605
# of scaffolds >= 2Kbp 428
Scaffold N50 16
Scaffold L50 (Mbp) 0.69
# of gaps 1231
% of scaffold length in gaps 7.7%
Three largest Scaffolds (Mbp) 2.44, 2.06, 1.77

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 56307 48088 85.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1723 1416
transcript 1374 1136
exon 240 150
intron 76 57
protein length (aa) 391 311
exons per gene 5.72 4
# of gene models 14065


David Hibbett, Clark University

Igor Grigoriev, DOE Joint Genome Institute


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.