Info • Hydnomerulius pinastri v2.0


This draft release was produced using Illumina data and the AllPathsLG assembler. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.


Summary statistics for the Hydnomerulius pinastri v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 38.28
Sequencing read coverage depth 41.3
# of contigs 2315
# of scaffolds 603
# of scaffolds >= 2Kbp 428
Scaffold N50 16
Scaffold L50 (Mbp) 0.69
# of gaps 1712
% of scaffold length in gaps 7.9%
Three largest Scaffolds (Mbp) 2.44, 2.06, 1.77

ESTs Data set # sequences total # mapped to genome % mapped to genome
RNAseq contigs RNAseq contigs 56307 48361 85.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1710 1401
transcript 1352 1105
exon 232 145
intron 76 57
protein length (aa) 406 325
exons per gene 5.84 4
# of gene models 13270


David Hibbett, Clark University Igor Grigoriev, DOE Joint Genome Institute

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.