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Info • Hydnum rufescens UP504 v2.0


Assembly v2 (January 2015) is an improved draft assembly, drafted from Illumina gDNAs using AllPathsLG and then improved with PacBio gDNAs using PBJelly.

Summary statistics for the Hydnum rufescens UP504 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 67.14
Sequencing read coverage depth 102x
# of contigs 2013
# of scaffolds 1072
# of scaffolds >= 2Kbp 817
Scaffold N50 99
Scaffold L50 (Mbp) 0.22
# of gaps 941
% of scaffold length in gaps 3.6%
Three largest Scaffolds (Mbp) 0.92, 0.76, 0.67

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 57141 54427 95.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1475 1167
transcript 1131 881
exon 213 140
intron 82 63
protein length (aa) 327 238
exons per gene 5.32 4
# of gene models 18665


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.