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Info • Hypoxylon sp. CI-4A v1.0

Status

Assembly v1 (October 2011) is a draft assembly of Solexa gDNA reads using AllPathsLG.

Summary statistics for the Hypoxylon sp. CI-4A v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.70
Sequencing read coverage depth 114.6x
# of contigs 944
# of scaffolds 899
# of scaffolds >= 2Kbp 487
Scaffold N50 35
Scaffold L50 (Mbp) 0.35
# of gaps 45
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.16, 1.14, 1.02


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Combest_assemblies 67109 66854 99.6%
Other Rnnotator_contigs 24437 23983 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1761 1541
transcript 1600 1390
exon 564 354
intron 89 65
description:
protein length (aa) 459 384
exons per gene 2.84 2
# of gene models 11712


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.