Info • Hypoxylon sp. CO27-5 v1.0

Status

Assembly v1 (January 2012) is a draft assembly of Solexa gDNA reads using AllPathsLG.

Summary statistics for the Hypoxylon sp. CO27-5 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.59
Sequencing read coverage depth 138.1x
# of contigs 580
# of scaffolds 505
# of scaffolds >= 2Kbp 473
Scaffold N50 83
Scaffold L50 (Mbp) 0.18
# of gaps 75
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.58, 0.52, 0.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Combest_assemblies 91864 91523 99.6%
Other Rnnotator_contigs 33443 31498 94.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1800 1540
transcript 1590 1380
exon 548 332
intron 112 65
description:
protein length (aa) 459 384
exons per gene 2.90 2
# of gene models 12256


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.