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Info • Hypoxylon sp. EC38 v1.0
Please note that this organism is for archival use only. Please see the current Hypoxylon sp. EC38 v3.0 site for the latest data and information.

Status

Assembly v1 (February 2012) is a draft assembly of Solexa gDNA reads using AllPathsLG.

Summary statistics for the Hypoxylon sp. EC38 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 47.30
Sequencing read coverage depth 90.9x
# of contigs 1302
# of scaffolds 1168
# of scaffolds >= 2Kbp 965
Scaffold N50 70
Scaffold L50 (Mbp) 0.19
# of gaps 134
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.76, 0.74, 0.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Combest_assemblies 88997 88744 99.7%
Other Rnnotator_contigs 38317 35944 93.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1757 1560
transcript 1576 1370
exon 552 338
intron 100 65
description:
protein length (aa) 456 380
exons per gene 2.86 2
# of gene models 12261


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.