Info • Hypoxylon argillaceum CBS 527.63 v1.0

Status

[August 2019] The Hypoxylon argillaceum CBS 527.63 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon argillaceum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 54.44
Sequencing read coverage depth 99.29x
# of contigs 2090
# of scaffolds 2073
# of scaffolds >= 2Kbp 1446
Scaffold N50 103
Scaffold L50 (Mbp) 0.15
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.05, 0.71, 0.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57172 56338 98.5%
Ests est.fasta 175451087 174790276 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2032 1811
transcript 1832 1620
exon 588 364
intron 97 68
description:
protein length (aa) 484 407
exons per gene 3.12 3
# of gene models 12590


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.