Info • Hypoxylon cercidicola CBS 119009 v1.0

Status

[June 2019] The Hypoxylon cercidicola CBS 119009 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon cercidicola CBS 119009 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.62
Sequencing read coverage depth 148.115683974x
# of contigs 63
# of scaffolds 60
# of scaffolds >= 2Kbp 59
Scaffold N50 9
Scaffold L50 (Mbp) 1.30
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.05, 2.56, 2.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46793 46188 98.7%
Ests est.fasta 188775478 187920693 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2000 1778
transcript 1840 1622
exon 626 393
intron 85 63
description:
protein length (aa) 482 401
exons per gene 2.94 2
# of gene models 11824


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.