Info • Hypoxylon crocopeplum CBS 119004 v1.0

Status

[June 2019] The Hypoxylon crocopeplum CBS 119004 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon crocopeplum CBS 119004 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.73
Sequencing read coverage depth 139.155001221x
# of contigs 182
# of scaffolds 180
# of scaffolds >= 2Kbp 160
Scaffold N50 17
Scaffold L50 (Mbp) 0.76
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.54, 1.91, 1.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45685 45276 99.1%
Ests est.fasta 168181642 167476093 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2008 1779
transcript 1843 1624
exon 612 388
intron 84 64
description:
protein length (aa) 485 408
exons per gene 3.01 3
# of gene models 12441


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.