Info • Hypoxylon fragiforme CBS 206.31 v2.0

Status

[November 2019] The Hypoxylon fragiforme CBS 206.31 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon fragiforme CBS 206.31 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.40
Sequencing read coverage depth 711.02x
# of contigs 15
# of scaffolds 15
# of scaffolds >= 2Kbp 15
Scaffold N50 5
Scaffold L50 (Mbp) 3.87
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.74, 4.45, 4.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54092 52875 97.8%
Ests est.fasta 235188774 233750779 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2065 1853
transcript 1878 1670
exon 632 392
intron 97 72
description:
protein length (aa) 484 408
exons per gene 2.97 3
# of gene models 10263


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.