Status
The genome sequence and gene prediction of Hypomyces perniciosus HP10 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on July 13, 2021. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.01 |
| Sequencing read coverage depth | 190x |
| # of contigs | 23 |
| # of scaffolds | 23 |
| # of scaffolds >= 2Kbp | 23 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 5.10 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 6.94, 5.36, 5.32 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1914 | 1533 |
| transcript | 1772 | 1405 |
| exon | 645 | 369 |
| intron | 80 | 64 |
| description: | ||
| protein length (aa) | 479 | 386 |
| exons per gene | 2.75 | 2 |
| # of gene models | 11447 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Li D, Sossah FL, Sun L, Fu Y, Li Y
Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus).
Genes (Basel). 2019 May 29;10(6):. doi: 10.3390/genes10060417
Li D, Sossah FL, Sun L, Fu Y, Li Y
Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus).
Genes (Basel). 2019 May 29;10(6):. doi: 10.3390/genes10060417
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
- JGI Mycoparasitic Fungi EcoGroup portal
Funding
This project was not sequenced at the JGI.
