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Info • Hypoxylon rubiginosum CBS 119005 v1.0

Status

[June 2019] The Hypoxylon rubiginosum CBS 119005 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hypoxylon rubiginosum CBS 119005 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.16
Sequencing read coverage depth 114.36x
# of contigs 573
# of scaffolds 568
# of scaffolds >= 2Kbp 483
Scaffold N50 62
Scaffold L50 (Mbp) 0.21
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.82, 0.71, 0.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47925 47327 98.8%
Ests est.fasta 159948860 159325663 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2011 1791
transcript 1837 1617
exon 615 388
intron 89 66
description:
protein length (aa) 483 405
exons per gene 2.99 3
# of gene models 12728


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.