Info • Hypholoma sublateritium v1.0


This draft release was produced using Illumina data and data simulated from a Newbler FQC assembly. Internal NCBI screening did not identify any contamination. The nuclear genome sequence from this finished assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Hypholoma sublateritium v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 48.03
Sequencing read coverage depth 152x
# of contigs 1329
# of scaffolds 704
# of scaffolds >= 2Kbp 514
Scaffold N50 44
Scaffold L50 (Mbp) 0.30
# of gaps 625
% of scaffold length in gaps 3.1%
Three largest Scaffolds (Mbp) 1.73, 1.05, 1.05

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 54810 52518 95.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1629 1344
transcript 1319 1086
exon 249 151
intron 74 58
protein length (aa) 387 307
exons per gene 5.29 4
# of gene models 17911


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.