Info • Hypoxylon vinosopulvinatum LGMF1613 v1.0
Please note that this organism is for archival use only. Please see the current Hypoxylon vinosopulvinatum LGMF1613 v2.0 site for the latest data and information.

Status

[August 2021] The Hypoxylon vinosopulvinatum LGMF1613 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.46
Sequencing read coverage depth 55.47x
# of contigs 21
# of scaffolds 21
# of scaffolds >= 2Kbp 21
Scaffold N50 5
Scaffold L50 (Mbp) 3.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.66, 4.42, 4.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36789 31135 84.6%
Ests est.fasta 168526216 167432452 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1891 1661
transcript 1729 1515
exon 592 369
intron 86 64
description:
protein length (aa) 488 411
exons per gene 2.92 2
# of gene models 11808


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.