Status
[April 2023] The Hypoxylon vinosopulvinatum LGMF1613 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 41.46 |
| Sequencing read coverage depth | 56.15x |
| # of contigs | 25 |
| # of scaffolds | 25 |
| # of scaffolds >= 2Kbp | 25 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 3.45 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 4.66, 4.41, 3.91 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 36789 | 31126 | 84.6% |
| Ests | est.fasta | 168526216 | 167433021 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1894 | 1647 |
| transcript | 1725 | 1502 |
| exon | 585 | 363 |
| intron | 88 | 64 |
| description: | ||
| protein length (aa) | 489 | 409 |
| exons per gene | 2.95 | 2 |
| # of gene models | 11869 |
Collaborators
- Francis Martin, INRA Nancy, France
- Chirlei Glienke, Universidade Federal do Paraná, PR, Brazil
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Xylariales Hypoxylon
- JGI EcoGroup Portal: Endophytic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
