Info • Hysterium pulicare

Status

The genome of Hysterium pulicare was not sequenced by the JGI but by the Oregon State University, within the AFTOL project. For more information, contact Prof. Joseph Spatafora. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Hysterium pulicare v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.43
Sequencing read coverage depth
# of contigs 1235
# of scaffolds 586
# of scaffolds >= 2Kbp 363
Scaffold N50 49
Scaffold L50 (Mbp) 0.24
# of gaps 649
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 0.91, 0.89, 0.77


Gene Models ExternalModels
length (bp) of: average median
gene 1727 1403
transcript 1527 1248
exon 483 271
intron 95 60
description:
protein length (aa) 509 416
exons per gene 3.16 3
# of gene models 12352


Collaborators

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037

Funding

This project was not sequenced at the JGI.