Info • Ilyonectria sp. MPI-CAGE-AT-0026 v1.0

Status

[August 2017] The Ilyonectria sp. MPI-CAGE-AT-0026 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 62.83
Sequencing read coverage depth 94.44x
# of contigs 81
# of scaffolds 81
# of scaffolds >= 2Kbp 80
Scaffold N50 10
Scaffold L50 (Mbp) 2.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.35, 3.98, 3.46


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46011 44289 96.3%
Ests est.fasta 211840454 209353169 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1661 1441
transcript 1515 1308
exon 530 330
intron 81 60
description:
protein length (aa) 450 376
exons per gene 2.86 2
# of gene models 20870


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.