Info • Irpex lacteus CCBAS Fr. 238 617/93 v1.0

Status

[January 2017] The Irpex lacteus CCBAS Fr. 238 617/93 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Irpex lacteus CCBAS Fr. 238 617/93 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.74
Sequencing read coverage depth 80.32x
# of contigs 424
# of scaffolds 424
# of scaffolds >= 2Kbp 420
Scaffold N50 24
Scaffold L50 (Mbp) 0.48
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.96, 1.72, 1.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 128326 119538 93.2%
Ests est.fasta 213756435 207400997 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1759 1499
transcript 1407 1188
exon 232 143
intron 71 60
description:
protein length (aa) 410 335
exons per gene 6.07 5
# of gene models 15319


Collaborators

Eric Record, and Marie-Noëlle Rosso, Biodiversité et Biotechnologie Fongique INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.