Info • Jumillera viridis CIRM-BRFM 2385 v1.0

Status

[June 2022] The Jumillera viridis CIRM-BRFM 2385 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.94
Sequencing read coverage depth 180.77x
# of contigs 602
# of scaffolds 584
# of scaffolds >= 2Kbp 470
Scaffold N50 47
Scaffold L50 (Mbp) 0.26
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.00, 0.99, 0.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49645 47878 96.4%
Ests est.fasta 84075604 83684257 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2042 1828
transcript 1846 1630
exon 615 392
intron 100 69
description:
protein length (aa) 478 401
exons per gene 3.00 3
# of gene models 11281


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.