Info • Kalmanozyma brasiliensis GHG001

Status

The genome sequence and gene models of Kalmanozyma brasiliensis GHG001 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 17.33
Sequencing read coverage depth
# of contigs 48
# of scaffolds 45
# of scaffolds >= 2Kbp 35
Scaffold N50 7
Scaffold L50 (Mbp) 0.72
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.21, 1.72, 1.43


Gene Models ExternalModels
length (bp) of: average median
gene 1822 1509
transcript 1695 1416
exon 1104 807
intron 239 113
description:
protein length (aa) 565 472
exons per gene 1.54 1
# of gene models 5765


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Oliveira JVC, Borges TA, Corrêa Dos Santos RA, Freitas LFD, Rosa CA, Goldman GH, Riaño-Pachón DM
Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots.
Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2159-2168. doi: 10.1099/ijs.0.060103-0

Oliveira JV, Dos Santos RA, Borges TA, Riaño-Pachón DM, Goldman GH
Draft Genome Sequence of Pseudozyma brasiliensis sp. nov. Strain GHG001, a High Producer of Endo-1,4-Xylanase Isolated from an Insect Pest of Sugarcane.
Genome Announc. 2013 Dec 19;1(6):. doi: 10.1128/genomeA.00920-13

Funding

This project was not sequenced at the JGI.