Info • Kalaharituber pfeilii F3 v1.0

Status

Assembly v1 (October 2015) is a standard draft assembly, using PacBio gDNAs assembled with Falcon, improved with finisherSC, and polished with quiver.

Summary statistics for the Kalaharituber pfeilii F3 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 78.99
Sequencing read coverage depth
# of contigs 595
# of scaffolds 595
# of scaffolds >= 2Kbp 526
Scaffold N50 31
Scaffold L50 (Mbp) 0.63
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.99, 2.83, 2.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42597 37310 87.6%
Ests est.fasta 113118653 111690390 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1523 1224
transcript 1306 1005
exon 394 244
intron 96 67
description:
protein length (aa) 356 253
exons per gene 3.32 3
# of gene models 15190


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.