Info • Karstenula rhodostoma CBS 690.94 v1.0


[March 2014] The Karstenula rhodostoma genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Karstenula rhodostoma CBS 690.94 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.07
Sequencing read coverage depth 121x
# of contigs 498
# of scaffolds 139
# of scaffolds >= 2Kbp 97
Scaffold N50 10
Scaffold L50 (Mbp) 1.93
# of gaps 359
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 3.08, 3.02, 2.86

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 27633 27503 99.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1675 1428
transcript 1518 1296
exon 561 360
intron 94 56
protein length (aa) 431 354
exons per gene 2.71 2
# of gene models 15043


Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.