Info • Kickxella alabastrina RSA 675 v1.0

Status

[April 2017] The Kickxella alabastrina RSA 675 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Kickxella alabastrina RSA 675 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 22.26
Sequencing read coverage depth 391.18x
# of contigs 215
# of scaffolds 215
# of scaffolds >= 2Kbp 208
Scaffold N50 13
Scaffold L50 (Mbp) 0.61
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.16, 1.02, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 18967 14885 78.5%
Ests est.fasta 116367132 115113103 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1576 1283
transcript 1429 1161
exon 641 362
intron 121 49
description:
protein length (aa) 411 320
exons per gene 2.23 1
# of gene models 7475


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.