Info • Kluyveromyces marxianus NRRL Y-1190 v1.0


[February 2021] The Kluyveromyces marxianus NRRL Y-1190 genome was not sequenced by the JGI. The assembly was provided by Eric Young and it was annotated using the JGI Fungal Annotation Pipeline.
The transcriptome was sequenced with Illumina at the JGI and assembled using Trinity.

Summary statistics for the Kluyveromyces marxianus NRRL Y-1190 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.79
Sequencing read coverage depth
# of contigs 16
# of scaffolds 16
# of scaffolds >= 2Kbp 16
Scaffold N50 4
Scaffold L50 (Mbp) 1.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.71, 1.71, 1.69

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 457399463 451902042 98.8%
Other Trinity_assembled_Illumina_transcriptome 21502 12561 58.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1743 1533
transcript 1711 1506
exon 1137 983
intron 66 35
protein length (aa) 482 407
exons per gene 1.50 1
# of gene models 5005


  • Eric Young, Worchester Polytechnic Institute, Worchester, MA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.