Info • Kretzschmaria deusta IL1129 v1.0

Status

[March 2019] The Kretzschmaria deusta IL1129 genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Kretzschmaria deusta IL1129 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.08
Sequencing read coverage depth 282.71x
# of contigs 125
# of scaffolds 125
# of scaffolds >= 2Kbp 125
Scaffold N50 20
Scaffold L50 (Mbp) 0.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.54, 2.30, 2.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52921 51955 98.2%
Ests est.fasta 183884185 182939824 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1983 1758
transcript 1784 1563
exon 579 361
intron 97 68
description:
protein length (aa) 470 387
exons per gene 3.08 3
# of gene models 13003


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.