Status
[February 2022] The Kretzschmaria zonata GFP132 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 67.66 |
| Sequencing read coverage depth | 32.17x |
| # of contigs | 12 |
| # of scaffolds | 12 |
| # of scaffolds >= 2Kbp | 12 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 7.47 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 9.37, 9.16, 8.74 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 42956 | 42000 | 97.8% |
| Ests | est.fasta | 26677369 | 23381033 | 87.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1940 | 1669 |
| transcript | 1714 | 1468 |
| exon | 538 | 330 |
| intron | 105 | 68 |
| description: | ||
| protein length (aa) | 485 | 395 |
| exons per gene | 3.19 | 3 |
| # of gene models | 12135 |
Collaborators
- Francis M. Martin, INRA, France
- Gabriela Piccolo Maitan-Alfenas, Universidade Federal de Viçosa (UFV), Brazil
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
do Carmo MRA, Manassero A, Ventorim RZ, Peng M, Morgan T, LaButti K, Lipzen A, Ahrendt S, Grigoriev IV, Ng V, Koriabine M, Bauer D, Drula E, Henrissat B, Alfenas RF, de Vries RP, Maitan-Alfenas GP
Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132.
Mol Genet Genomics. 2025 May 5;300(1):47. doi: 10.1007/s00438-025-02253-7
do Carmo MRA, Manassero A, Ventorim RZ, Peng M, Morgan T, LaButti K, Lipzen A, Ahrendt S, Grigoriev IV, Ng V, Koriabine M, Bauer D, Drula E, Henrissat B, Alfenas RF, de Vries RP, Maitan-Alfenas GP
Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132.
Mol Genet Genomics. 2025 May 5;300(1):47. doi: 10.1007/s00438-025-02253-7
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Xylariales
- JGI EcoGroup Portals: Plant Pathogens Plant Pathogenic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
