Info • Kriegeriales sp. isolate P6C61 v1.0


[May 2022] The Kriegeriales sp. isolate P6C61 v1.0 genome was sequenced with PacBio, assembled with Hicanu, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Kriegeriales sp. isolate P6C61 is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the smaller scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Genome Assembly
Genome Assembly size (Mbp) 75.29
Sequencing read coverage depth 26.37x
# of contigs 140
# of scaffolds 140
# of scaffolds >= 2Kbp 140
Scaffold N50 9
Scaffold L50 (Mbp) 3.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.88, 5.31, 5.05

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 101629 99542 97.9%
Ests est.fasta 184804468 182305297 98.6%

Gene Models FilteredModels3
length (bp) of: average median
gene 2244 1983
transcript 1725 1517
exon 226 130
intron 80 67
protein length (aa) 413 330
exons per gene 7.63 6
# of gene models 15297




The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.