Info • Kurtia argillacea OMC1749 v1.0

Status

[June 2019] This genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Kurtia argillacea OMC1749 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.15
Sequencing read coverage depth 342.29x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 6
Scaffold L50 (Mbp) 2.71
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.66, 3.37, 3.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 84583 82656 97.7%
Ests est.fasta 55766080 55101982 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1840 1604
transcript 1535 1350
exon 255 154
intron 63 54
description:
protein length (aa) 442 371
exons per gene 6.03 5
# of gene models 13652


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.