Info • Lachancea sp. CBS6924

Status

The genome sequence and gene models of Lachancea sp. CBS6924 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Lachancea sp. CBS6924 are below.
Genome Assembly
Genome Assembly size (Mbp) 11.34
Sequencing read coverage depth 20x
# of contigs 16
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 2.18
# of gaps 9
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.44, 2.30, 2.18


Gene Models ExternalModels
length (bp) of: average median
gene 1480 1230
transcript 1469 1221
exon 1377 1152
intron 162 94
description:
protein length (aa) 490 407
exons per gene 1.07 1
# of gene models 5059


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G
Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.
Genome Res. 2016 Jul;26(7):918-32. doi: 10.1101/gr.204420.116

Funding

This project was not sequenced at the JGI.