Status
Summary statistics for the Laccaria bicolor v2.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 60.71 |
| # of contigs | 584 |
| # of scaffolds | 55 |
| # of scaffolds >= 2Kbp | 55 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 4.31 |
| # of gaps | 529 |
| % of scaffold length in gaps | 2.0% |
| Three largest Scaffolds (Mbp) | 12.61, 7.96, 4.75 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EST Clusters | Sanger EST Clusters | 14312 | 9516 | 66.5% |
| ESTs | Sanger ESTs | 38901 | 30594 | 78.6% |
| EST Clusters | 454 Clusters | 10598 | 8958 | 84.5% |
| ESTs | 454 ESTs | 186230 | 87856 | 47.2% |
| EST Clusters | Illumina Assembled RNAseq | 89008 | 35406 | 39.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1549 | 1191 |
| transcript | 1163 | 876 |
| exon | 220 | 135 |
| intron | 92 | 57 |
| description: | ||
| protein length (aa) | 356 | 267 |
| exons per gene | 5.28 | 4 |
| # of gene models | 23132 |
Collaborators
Francis Martin, Ph.D., Tree-Microbe Interactions Department, INRA-Nancy
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, Brokstein P, Canbäck B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbé J, Lin YC, Legué V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kües U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouzé P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
Nature. 2008 Mar 6;452(7183):88-92. doi: 10.1038/nature06556
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E, Pereda V, Salamov A, Shapiro HJ, Wuyts J, Blaudez D, Buée M, Brokstein P, Canbäck B, Cohen D, Courty PE, Coutinho PM, Delaruelle C, Detter JC, Deveau A, DiFazio S, Duplessis S, Fraissinet-Tachet L, Lucic E, Frey-Klett P, Fourrey C, Feussner I, Gay G, Grimwood J, Hoegger PJ, Jain P, Kilaru S, Labbé J, Lin YC, Legué V, Le Tacon F, Marmeisse R, Melayah D, Montanini B, Muratet M, Nehls U, Niculita-Hirzel H, Oudot-Le Secq MP, Peter M, Quesneville H, Rajashekar B, Reich M, Rouhier N, Schmutz J, Yin T, Chalot M, Henrissat B, Kües U, Lucas S, Van de Peer Y, Podila GK, Polle A, Pukkila PJ, Richardson PM, Rouzé P, Sanders IR, Stajich JE, Tunlid A, Tuskan G, Grigoriev IV
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
Nature. 2008 Mar 6;452(7183):88-92. doi: 10.1038/nature06556
Links
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
