Status
Assembly v1 (May 2013) is a standard draft assembly. A total of 946 scaffolds and 51.0 Mbp were assembled from Illumina gDNAs using AllPathsLG.
Summary statistics for the Laccaria bicolor 81306 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 50.95 |
| Sequencing read coverage depth | 111.4x |
| # of contigs | 2730 |
| # of scaffolds | 946 |
| # of scaffolds >= 2Kbp | 753 |
| Scaffold N50 | 74 |
| Scaffold L50 (Mbp) | 0.19 |
| # of gaps | 1784 |
| % of scaffold length in gaps | 4.7% |
| Three largest Scaffolds (Mbp) | 0.93, 0.86, 0.77 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 27872 | 22448 | 80.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1593 | 1283 |
| transcript | 1250 | 1005 |
| exon | 234 | 144 |
| intron | 81 | 56 |
| description: | ||
| protein length (aa) | 378 | 295 |
| exons per gene | 5.34 | 4 |
| # of gene models | 17791 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
