Status
Assembly v1 (Jun 2015) is a minimal draft assembly from Illumina gDNAs using successively Velvet and AllPathsLG.
Summary statistics for the Laccaria bicolor Cham3 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.65 |
| Sequencing read coverage depth | 152.2x |
| # of contigs | 3637 |
| # of scaffolds | 3327 |
| # of scaffolds >= 2Kbp | 2481 |
| Scaffold N50 | 338 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 310 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 0.39, 0.32, 0.29 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1470 | 1199 |
| transcript | 1157 | 921 |
| exon | 217 | 135 |
| intron | 74 | 56 |
| description: | ||
| protein length (aa) | 386 | 307 |
| exons per gene | 5.32 | 4 |
| # of gene models | 16084 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
