Status
Assembly v1 (Aug 2013) is an improved draft assembly. A total of 2920 scaffolds and 70.0 Mbp were assembled from Illumina gDNAs using AllPathsLG and improved with PacBio reads and PBJelly.
Summary statistics for the Laccaria bicolor D101 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 70.03 |
| Sequencing read coverage depth | 85.1x |
| # of contigs | 4003 |
| # of scaffolds | 2920 |
| # of scaffolds >= 2Kbp | 2088 |
| Scaffold N50 | 171 |
| Scaffold L50 (Mbp) | 0.11 |
| # of gaps | 1083 |
| % of scaffold length in gaps | 3.8% |
| Three largest Scaffolds (Mbp) | 1.01, 1.00, 0.88 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 32115 | 26779 | 83.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1530 | 1189 |
| transcript | 1191 | 935 |
| exon | 237 | 146 |
| intron | 86 | 56 |
| description: | ||
| protein length (aa) | 360 | 273 |
| exons per gene | 5.02 | 4 |
| # of gene models | 22538 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
