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Info • Laccaria bicolor DR170 v1.0

Status

(June 2016) The genome was sequenced with Illumina technology, assembled with AllPathsLG, improved with finisherSC, and polished with and Quiver using sequences generated with PacBio technology. The transcriptome was sequenced with Illumina and assembled with Trinity.

Summary statistics for the Laccaria bicolor DR170 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 79.07
Sequencing read coverage depth 69x
# of contigs 7156
# of scaffolds 1941
# of scaffolds >= 2Kbp 1617
Scaffold N50 185
Scaffold L50 (Mbp) 0.11
# of gaps 5215
% of scaffold length in gaps 9.6%
Three largest Scaffolds (Mbp) 1.62, 1.22, 0.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 95866 78469 81.9%
Ests est.fasta 139436368 123651316 88.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1382 1074
transcript 1054 823
exon 198 131
intron 78 56
description:
protein length (aa) 310 225
exons per gene 5.33 4
# of gene models 24004


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.