Status
(June 2016) The genome was sequenced with Illumina technology, assembled with AllPathsLG, improved with finisherSC, and polished with and Quiver using sequences generated with PacBio technology. The transcriptome was sequenced with Illumina and assembled with Trinity.
Summary statistics for the Laccaria bicolor DR170 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 79.07 |
| Sequencing read coverage depth | 69x |
| # of contigs | 7156 |
| # of scaffolds | 1941 |
| # of scaffolds >= 2Kbp | 1617 |
| Scaffold N50 | 185 |
| Scaffold L50 (Mbp) | 0.11 |
| # of gaps | 5215 |
| % of scaffold length in gaps | 9.6% |
| Three largest Scaffolds (Mbp) | 1.62, 1.22, 0.90 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 95866 | 78469 | 81.9% |
| Ests | est.fasta | 139436368 | 123651316 | 88.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1382 | 1074 |
| transcript | 1054 | 823 |
| exon | 198 | 131 |
| intron | 78 | 56 |
| description: | ||
| protein length (aa) | 310 | 225 |
| exons per gene | 5.33 | 4 |
| # of gene models | 24004 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
