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Info • Laccaria bicolor S238N-H53 v1.0

Status

Assembly v1 (Jun 2015) is a standard draft assembly from Illumina gDNAs using AllPathsLG.

Summary statistics for the Laccaria bicolor S238N-H53 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.78
Sequencing read coverage depth 86.5x
# of contigs 3014
# of scaffolds 1284
# of scaffolds >= 2Kbp 920
Scaffold N50 88
Scaffold L50 (Mbp) 0.16
# of gaps 1730
% of scaffold length in gaps 4.2%
Three largest Scaffolds (Mbp) 1.08, 0.92, 0.92


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other INRA_RNA_contigs 12729 11498 90.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1536 1247
transcript 1217 957
exon 230 144
intron 76 56
description:
protein length (aa) 373 287
exons per gene 5.29 4
# of gene models 18468


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.