Status
Assembly v1 (Jan 2014) is an improved draft assembly. A total of 1564 scaffolds and 57.0 Mbp were assembled from Illumina gDNAs using AllPathsLG and improved with PacBio reads and PBJelly.
Summary statistics for the Laccaria bicolor S238N-H70 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 57.05 |
| Sequencing read coverage depth | 88.1x |
| # of contigs | 2269 |
| # of scaffolds | 1564 |
| # of scaffolds >= 2Kbp | 1157 |
| Scaffold N50 | 96 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 705 |
| % of scaffold length in gaps | 2.6% |
| Three largest Scaffolds (Mbp) | 1.45, 1.12, 1.00 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 14762 | 13270 | 89.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1539 | 1222 |
| transcript | 1188 | 930 |
| exon | 224 | 141 |
| intron | 83 | 56 |
| description: | ||
| protein length (aa) | 365 | 278 |
| exons per gene | 5.31 | 4 |
| # of gene models | 19903 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
