Status
Assembly v1 (Feb 2013) is a minimal draft assembly. A total of 3788 scaffolds and 42.1 Mbp were assembled from Illumina gDNAs using Velvet and AllPathsLG sequentially.
Summary statistics for the Laccaria bicolor S238N-H82xH70
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 42.12 |
| Sequencing read coverage depth | 134.5x |
| # of contigs | 4436 |
| # of scaffolds | 3788 |
| # of scaffolds >= 2Kbp | 2611 |
| Scaffold N50 | 332 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 648 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 0.48, 0.37, 0.36 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 14387 | 12160 | 84.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1532 | 1249 |
| transcript | 1217 | 966 |
| exon | 230 | 143 |
| intron | 75 | 56 |
| description: | ||
| protein length (aa) | 372 | 289 |
| exons per gene | 5.28 | 4 |
| # of gene models | 17045 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
