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Info • Laccaria bicolor S238N v1.0

Status

Assembly v1 (Jun 2015) is a standard draft assembly from Illumina gDNAs using AllPathsLG.

Summary statistics for the Laccaria bicolor S238N v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 67.66
Sequencing read coverage depth 69.4x
# of contigs 6556
# of scaffolds 1577
# of scaffolds >= 2Kbp 1227
Scaffold N50 113
Scaffold L50 (Mbp) 0.16
# of gaps 4979
% of scaffold length in gaps 11.6%
Three largest Scaffolds (Mbp) 1.25, 1.07, 0.98


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other INRA_RNA_contigs 19243 16052 83.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1460 1152
transcript 1144 877
exon 227 142
intron 80 56
description:
protein length (aa) 351 262
exons per gene 5.04 4
# of gene models 21724


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.