Info • Laccaria bicolor S238O v1.0

Status

Assembly v1 (Sep 2015) is a standard draft assembly from Illumina gDNAs using AllPathsLG.

Summary statistics for the Laccaria bicolor S238O v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.06
Sequencing read coverage depth 132.4x
# of contigs 3633
# of scaffolds 1370
# of scaffolds >= 2Kbp 1024
Scaffold N50 68
Scaffold L50 (Mbp) 0.20
# of gaps 2263
% of scaffold length in gaps 4.3%
Three largest Scaffolds (Mbp) 1.13, 1.08, 1.04


Gene Models FilteredModels1
length (bp) of: average median
gene 1494 1222
transcript 1165 927
exon 220 135
intron 79 56
description:
protein length (aa) 388 309
exons per gene 5.29 4
# of gene models 17767


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.