Info • Lachancea fermentati INRA UMR 1319

Status

The genome sequence and gene models of Lachancea fermentati INRA UMR 1319 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Lachancea fermentati INRA UMR 1319 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.26
Sequencing read coverage depth
# of contigs 24
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 4
Scaffold L50 (Mbp) 1.35
# of gaps 16
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 1.63, 1.56, 1.50


Gene Models ExternalModels
length (bp) of: average median
gene 1475 1230
transcript 1466 1227
exon 1375 1155
intron 131 69
description:
protein length (aa) 489 409
exons per gene 1.07 1
# of gene models 5233


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G
Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.
Genome Res. 2016 Jul;26(7):918-32. doi: 10.1101/gr.204420.116

Funding

This project was not sequenced at the JGI.