Info • Lactarius hengduanensis 84 v1.0

Status

[July 2018] (July 2018) The Lactarius hengduanensis genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in Download.

Summary statistics for the Lactarius hengduanensis 84 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.96
Sequencing read coverage depth 233.59x
# of contigs 1825
# of scaffolds 1825
# of scaffolds >= 2Kbp 1755
Scaffold N50 226
Scaffold L50 (Mbp) 0.07
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.50, 0.42, 0.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 110563 83399 75.4%
Ests est.fasta 221263173 208606078 94.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1677 1410
transcript 1342 1113
exon 236 153
intron 74 57
description:
protein length (aa) 393 311
exons per gene 5.68 5
# of gene models 15957


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.