Info • Lachancea nothofagi CBS 11611

Status

The genome sequence and gene models of Lachancea nothofagi CBS 11611 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Lachancea nothofagi CBS 11611 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 11.31
Sequencing read coverage depth
# of contigs 21
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 1.76
# of gaps 13
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 2.35, 1.78, 1.76


Gene Models ExternalModels
length (bp) of: average median
gene 1470 1224
transcript 1460 1215
exon 1369 1140
intron 154 87
description:
protein length (aa) 487 405
exons per gene 1.07 1
# of gene models 5154


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Vakirlis N, Sarilar V, Drillon G, Fleiss A, Agier N, Meyniel JP, Blanpain L, Carbone A, Devillers H, Dubois K, Gillet-Markowska A, Graziani S, Huu-Vang N, Poirel M, Reisser C, Schott J, Schacherer J, Lafontaine I, Llorente B, Neuvéglise C, Fischer G
Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus.
Genome Res. 2016 Jul;26(7):918-32. doi: 10.1101/gr.204420.116

Funding

This project was not sequenced at the JGI.