Info • Lactarius psammicola BPL869 v1.0

Status

[June 2018] The Lactarius psammicola BPL869 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assemblied separately and is available on the Download page.

Summary statistics for the Lactarius psammicola BPL869 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 69.82
Sequencing read coverage depth 107.47x
# of contigs 1433
# of scaffolds 1433
# of scaffolds >= 2Kbp 1399
Scaffold N50 137
Scaffold L50 (Mbp) 0.11
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.28, 1.08, 0.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 102417 87781 85.7%
Ests est.fasta 141096423 123097130 87.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1800 1535
transcript 1451 1213
exon 240 152
intron 71 58
description:
protein length (aa) 425 336
exons per gene 6.04 5
# of gene models 13442


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.