Info • Lactifluus subvellereus BPL653 v1.0

Status

[January 2017] The Lactifluus subvellereus BPL653 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lactifluus subvellereus BPL653 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.82
Sequencing read coverage depth 156.74x
# of contigs 1468
# of scaffolds 1468
# of scaffolds >= 2Kbp 1294
Scaffold N50 55
Scaffold L50 (Mbp) 0.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.61, 1.30, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 98540 91273 92.6%
Ests est.fasta 128667620 126650215 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1620 1321
transcript 1322 1059
exon 244 153
intron 69 58
description:
protein length (aa) 377 288
exons per gene 5.42 4
# of gene models 12802


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.