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Info • Lactarius vividus 141 v1.0

Status

[July 2018] The Lactarius vividus genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Lactarius vividus 141 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 69.04
Sequencing read coverage depth 107.62x
# of contigs 1123
# of scaffolds 1123
# of scaffolds >= 2Kbp 1078
Scaffold N50 76
Scaffold L50 (Mbp) 0.20
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.93, 1.66, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 86708 80756 93.1%
Ests est.fasta 253774291 247366431 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1837 1579
transcript 1501 1269
exon 243 152
intron 67 57
description:
protein length (aa) 435 350
exons per gene 6.18 5
# of gene models 11612


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.