Info • Lasiosphaeris hispida CBS 955.72 v1.0

Status

[May 2018] The Lasiosphaeris hispida CBS 955.72 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lasiosphaeris hispida v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.44
Sequencing read coverage depth 260.29x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 23
Scaffold N50 4
Scaffold L50 (Mbp) 6.09
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.97, 6.83, 6.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41204 40304 97.8%
Ests est.fasta 110881090 110801590 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1769 1514
transcript 1603 1354
exon 593 372
intron 99 64
description:
protein length (aa) 450 361
exons per gene 2.71 2
# of gene models 14680


Collaborators

Pierre Gladieux, INRA, France

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.